pbbam - PacBio BAM C++ library, with SWIG bindings

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Quarterly i386
Package filename pbbam-0.18.0_3.txz
Package name pbbam
Package version 0.18.0
Package release 3
Package architecture i386
Package type txz
Category biology
Homepage https://github.com/PacificBiosciences/pbbam
Maintainer jwb@FreeBSD.org
Download size 620.32 KB
Installed size 2.86 MB
As of the 3.0 release of SMRTanalysis, PacBio is embracing the industry
standard BAM format for (both aligned and unaligned) basecall data files. We
have also formulated a BAM companion file format (bam.pbi) enabling fast access
to a richer set of per-read information as well as compatibility for software
built around the legacy cmp.h5 format.
The pbbam software package provides components to create, query, & edit PacBio
BAM files and associated indices. These components include a core C++ library,
bindings for additional languages, and command-line utilities.
WWW: https://github.com/PacificBiosciences/pbbam


Package Version Architecture Repository
pbbam-0.18.0_3.txz 0.18.0 amd64 FreeBSD Ports Latest
pbbam-0.18.0_3.txz 0.18.0 i386 FreeBSD Ports Latest
pbbam-0.18.0_3.txz 0.18.0 amd64 FreeBSD Ports Quarterly
pbbam - - -


Name Value
boost-libs = 1.71.0
htslib = 1.9
libhts.so.2 -
python36 = 3.6.9


Name Value
libpbbam.so.0.18.0 -


Type URL
Mirror pkg.freebsd.org
Binary Package pbbam-0.18.0_3.txz
Source Package biology/pbbam

Install Howto

Install pbbam txz package:

# pkg install pbbam

See Also

Package Description
pbc-0.5.14_1.txz Library of pairing-based cryptosystems
pbcopper-0.4.1_3.txz Core C++ library for Pacific Biosciences tools
pbi-manager-1456333648.txz PBI management utilities
pbimaker-1.3_1.txz Program to convert ports into PBI modules
pbnc-1.0_1.txz Simple userspace TCP port bouncer
pbnj-2.04_2.txz Suite of tools to monitor changes on a network
pbseqan-g20171011.txz Pacific Biosciences patched and stripped down SeqAn
pbzip2-1.1.13.txz Parallel BZIP2
pc-mixer-20171212_3.txz QT5 based audio mixer for FreeBSD
pcal-4.11.0.txz PostScript calendar program
pcapfix-1.1.4.txz Tool to repair damaged or corrupted pcap and pcapng files
pcb-4.2.0,1.txz X11 interactive printed circuit board layout system
pcbsd-appweb-1441129621_1.txz PC-BSD Web Interface
pcbsd-libsh-1438351389.txz PC-BSD Shell Library
pcbsd-syscache-1439494375_1.txz PC-BSD SysCache Utility