py36-pysam - Python module for reading, manipulating and writing genomic data sets

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Quarterly amd64
Package filename py36-pysam-0.15.2.txz
Package name py36-pysam
Package version 0.15.2
Package release -
Package architecture amd64
Package type txz
Category biology python
License MIT
Download size 1.85 MB
Installed size 7.12 MB
pysam is a lightweight wrapper of the htslib C-API and provides facilities to
read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access
to the command line functionality of the samtools and bcftools packages. The
module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using
cython and a high-level API for convenient access to the data within standard
genomic file formats.


Package Version Architecture Repository
py36-pysam-0.15.3.txz 0.15.3 i386 FreeBSD Ports Latest
py36-pysam-0.15.3.txz 0.15.3 amd64 FreeBSD Ports Latest
py36-pysam-0.15.2.txz 0.15.2 i386 FreeBSD Ports Quarterly
py36-pysam - - -


Name Value -
py36-cython = 0.29
py36-setuptools = 40.8.0
python36 = 3.6.8_1


Type URL
Binary Package py36-pysam-0.15.2.txz
Source Package biology/py-pysam

Install Howto

Install py36-pysam txz package:

# pkg install py36-pysam

See Also

Package Description
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py36-pyside2-5.12.3.txz Python Qt bindings for Qt 5.12+
py36-pyside2-tools-5.12.3.txz Pyside2 development tools
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py36-pysmi-0.3.3_3.txz SNMP/SMI MIB parsing in Python
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