py36-pysam-0.15.2.txz


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Description

py36-pysam - Python module for reading, manipulating and writing genomic data sets

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Quarterly amd64
Package filename py36-pysam-0.15.2.txz
Package name py36-pysam
Package version 0.15.2
Package release -
Package architecture amd64
Package type txz
Category biology python
Homepage https://github.com/pysam-developers/pysam
License MIT
Maintainer yuri@FreeBSD.org
Download size 1.85 MB
Installed size 7.12 MB
pysam is a lightweight wrapper of the htslib C-API and provides facilities to
read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access
to the command line functionality of the samtools and bcftools packages. The
module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using
cython and a high-level API for convenient access to the data within standard
genomic file formats.
WWW: https://github.com/pysam-developers/pysam

Alternatives

Package Version Architecture Repository
py36-pysam-0.15.3.txz 0.15.3 i386 FreeBSD Ports Latest
py36-pysam-0.15.3.txz 0.15.3 amd64 FreeBSD Ports Latest
py36-pysam-0.15.2.txz 0.15.2 i386 FreeBSD Ports Quarterly
py36-pysam - - -

Requires

Name Value
libpython3.6m.so.1.0 -
py36-cython = 0.29
py36-setuptools = 40.8.0
python36 = 3.6.8_1

Download

Type URL
Mirror pkg.freebsd.org
Binary Package py36-pysam-0.15.2.txz
Source Package biology/py-pysam

Install Howto

Install py36-pysam txz package:

# pkg install py36-pysam

See Also

Package Description
py36-pysaml2-4.7.0_1.txz Python implementation of SAML Version 2
py36-pyscard-1.9.7.txz Smartcard module for Python
py36-pyscreenshot-0.5.1_1.txz Python module for taking screenshots
py36-pyscss-1.3.5.txz Compiler for SCSS flavor of the Sass language
py36-pysdl2-0.9.6.txz Python bindings to the SDL2 libraries
py36-pysendfile-2.0.1_1.txz Python interface to sendfile(2)
py36-pysftp-0.2.9.txz Simple interface to SFTP
py36-pysha3-1.0.2.txz SHA-3 (Keccak) for Python
py36-pyshark-0.4.2.3.txz Pyhon packet parsing using wireshark dissectors
py36-pyshp-1.2.12.txz Pure Python read/write support for ESRI Shapefile format
py36-pyside2-5.12.3.txz Python Qt bindings for Qt 5.12+
py36-pyside2-tools-5.12.3.txz Pyside2 development tools
py36-pysmb-1.1.27.txz SMB/CIFS library written in Python
py36-pysmi-0.3.3_3.txz SNMP/SMI MIB parsing in Python
py36-pysndfile-1.3.3.txz Cython wrapper class for reading/writing soundfiles using libsndfile
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