protomol-2.0.3_14.txz


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Description

protomol - OO, component based, framework for molecular dynamics (MD) simulations

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Quarterly amd64
Package filename protomol-2.0.3_14.txz
Package name protomol
Package version 2.0.3
Package release 14
Package architecture amd64
Package type txz
Category biology
Homepage http://protomol.sourceforge.net/
License GPLv2
Maintainer ports@FreeBSD.org
Download size 1.51 MB
Installed size 12.16 MB
ProtoMol is an object-oriented, component based, framework for molecular
dynamics (MD) simulations. The framework supports the CHARMM 19 and 28a2 force
fields and is able to process PDB, PSF, XYZ and DCD trajectory files. It is
designed for high flexibility, easy extendibility and maintenance, and high
performance demands, including parallelization. The technique of multiple
time-stepping is used to improve long-term efficiency. The use of fast
electrostatic force evaluation algorithms like Ewald, particle Mesh Ewald (PME),
and Multigrid (MG) summation further enhances performance. Longer time steps
are possible using MOLLY, Langevin Molly and Hybrid Monte Carlo, Nose-Hoover,
and Langevin integrators. In addition, ProtoMol has been designed to interact
with VMD, a visualization engine developed by the University of Illinois that is
used for displaying large biomolecular systems in three dimensions. ProtoMol is
freely distributed software, and the source code is available.
WWW: http://protomol.sourceforge.net/
Options:
- EXAMPLES: on
- GLUT: on
===>   NOTICE:
The protomol port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

Alternatives

Package Version Architecture Repository
protomol-2.0.3_14.txz 2.0.3 i386 FreeBSD Ports Quarterly
protomol-2.0.3_14.txz 2.0.3 amd64 FreeBSD Ports Latest
protomol-2.0.3_14.txz 2.0.3 i386 FreeBSD Ports Latest
protomol - - -

Requires

Name Value
freeglut = 3.0.0_2
jpeg-turbo = 2.0.2
libGL.so.1 -
libGLU.so.1 -
libICE = 1.0.9_3,1
libICE.so.6 -
libSM = 1.2.3,1
libSM.so.6 -
libX11 = 1.6.7,1
libX11.so.6 -
libXext = 1.3.3_3,1
libXext.so.6 -
libXi = 1.7.9_2,1
libXi.so.6 -
libXmu = 1.1.2_5,1
libXmu.so.6 -
libXt = 1.1.5_2,1
libXt.so.6 -
libglut.so.3 -
libjpeg.so.8 -
libpng16.so.16 -
libtiff.so.5 -
png = 1.6.36
tiff = 4.0.10

Download

Type URL
Mirror pkg.freebsd.org
Binary Package protomol-2.0.3_14.txz
Source Package biology/protomol

Install Howto

Install protomol txz package:

# pkg install protomol

See Also

Package Description
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prototool-1.9.0_2.txz Swiss army knife for protocol buffers (ProtoBuf)
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protozero-1.6.8.txz Minimalist protocol buffer decoder and encoder in C++
protracker-2.b37,1.txz Amiga ProTracker clone
proxsmtp-1.10_2.txz Flexible SMTP filter which can act also as transparent proxy
proxy-suite-1.9.2.4_3.txz The SuSE Proxy-Suite, a set of programs to enhance firewall security
proxy65-1.2.0.20150210_2.txz XEP-0065 SOCKS5 Bytestreams external component for Jabber
proxychains-3.1_2.txz Redirect connection through proxy servers
proxychains-ng-4.14.txz Redirect connection through proxy servers
proxycheck-0.49a.txz Check for open proxy servers
proxyper-347_1.txz The official distributed.net v2 personal proxy
proxytunnel-1.9.1.txz Connects stdin and stdout to an origin server through an HTTPS proxy
prtunnel-0.2.7.txz Tunnel for TCP connections using an HTTP or SOCKS5 proxy
pructl-0.2_1.txz Utilities to interface with PRUs
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