prodigal-2.6.3.2.txz


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Description

prodigal - Protein-coding gene prediction for prokaryotic genomes

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Quarterly amd64
Package filename prodigal-2.6.3.2.txz
Package name prodigal
Package version 2.6.3.2
Package release -
Package architecture amd64
Package type txz
Category biology
Homepage https://github.com/hyattpd/Prodigal
License GPLv3
Maintainer yuri@FreeBSD.org
Download size 423.72 KB
Installed size 26.79 MB
Fast, reliable protein-coding gene prediction for prokaryotic genomes.
Features:
* Predicts protein-coding genes: Prodigal provides fast, accurate protein-coding
gene predictions in GFF3, Genbank, or Sequin table format.
* Handles draft genomes and metagenomes: Prodigal runs smoothly on finished
genomes, draft genomes, and metagenomes.
* Runs quickly: Prodigal analyzes the E. coli K-12 genome in 10 seconds on a
modern MacBook Pro.
* Runs unsupervised: Prodigal is an unsupervised machine learning algorithm. It
does not need to be provided with any training data, and instead automatically
learns the properties of the genome from the sequence itself, including RBS
motif usage, start codon usage, and coding statistics.
* Handles gaps and partial genes: The user can specify if Prodigal should build
genes across runs of N's as well as how to handle genes at the edges of
contigs.
* Identifies translation initiation sites: Prodigal predicts the correct
translation initiation site for most genes, and can output information about
every potential start site in the genome, including confidence score, RBS
motif, and much more.
WWW: https://github.com/hyattpd/Prodigal

Alternatives

Package Version Architecture Repository
prodigal-2.6.3.7.txz 2.6.3.7 amd64 FreeBSD Ports Latest
prodigal-2.6.3.7.txz 2.6.3.7 i386 FreeBSD Ports Latest
prodigal-2.6.3.2.txz 2.6.3.2 i386 FreeBSD Ports Quarterly
prodigal - - -

Download

Type URL
Mirror pkg.freebsd.org
Binary Package prodigal-2.6.3.2.txz
Source Package biology/prodigal

Install Howto

Install prodigal txz package:

# pkg install prodigal

See Also

Package Description
prodigy-lig-1.0.0.3_1.txz Prediction of protein-small molecule binding affinities
profanity-0.7.1.txz Console based XMPP client
profont-400_5.txz Ultimate programming font
proftpd-1.3.6.txz Highly configurable FTP daemon
proftpd-mod_clamav-0.14.r2.txz ClamAV ProFTPD module
proftpd-mod_ldap-1.3.6_3.txz LDAP and quotatab_ldap ProFTPD modules
proftpd-mod_sql_mysql-1.3.6.txz MySQL ProFTPD module
proftpd-mod_sql_odbc-1.3.6.txz ODBC ProFTPD module
proftpd-mod_sql_postgres-1.3.6_2.txz PostgreSQL ProFTPD module
proftpd-mod_sql_sqlite-1.3.6_3.txz SQLite ProFTPD module
proftpd-mod_sql_tds-4.13.txz TDS ProFTPD module
proftpd-mod_vroot-0.9.5.txz Virtual Chroot ProFTPD module
profxp-3p2_2.txz FXP (server-to-server FTP) client
proggy_fonts-1.0_5.txz The perfect monospaced bitmap programming fonts
proggy_fonts-ttf-1.0_3.txz The perfect monospaced bitmap programming fonts, TTF version
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