smoldyn - Biochemical simulator for molecular diffusion, surface interactions

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Latest i386
Package filename smoldyn-2.61.txz
Package name smoldyn
Package version 2.61
Package release -
Package architecture i386
Package type txz
Category science
License LGPL3
Download size 361.21 KB
Installed size 987.43 KB
Smoldyn is a computer program for cell-scale biochemical simulations. It
simulates each molecule of interest individually to capture natural
stochasticity and to yield nanometer-scale spatial resolution. It treats other
molecules implicitly, enabling it to simulate hundreds of thousands of molecules
over several minutes of real time. Simulated molecules diffuse, react, are
confined by surfaces, and bind to membranes much as they would in a real
biological system.
Smoldyn is easy to use and easy to install. It is more accurate and faster than
other particle-based simulators. Smoldyn's unique features include:
a "virtual experimenter" who can manipulate or measure the simulated system,
support for spatial compartments, molecules with excluded volume, and
simulations in 1, 2, or 3 dimensions.


Package Version Architecture Repository
smoldyn-2.61.txz 2.61 amd64 FreeBSD Ports Latest
smoldyn-2.61.txz 2.61 i386 FreeBSD Ports Quarterly
smoldyn-2.61.txz 2.61 amd64 FreeBSD Ports Quarterly
smoldyn - - -


Name Value
freeglut = 3.0.0_2 -
libGLU = 9.0.0_3 -
libXi = 1.7.10,1 -
libXmu = 1.1.3,1 - - -
mesa-libs = 18.3.2_1
tiff = 4.0.10_1


Type URL
Binary Package smoldyn-2.61.txz
Source Package science/smoldyn

Install Howto

Install smoldyn txz package:

# pkg install smoldyn

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