Jellyfish-2.2.10_7.txz


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Description

Jellyfish - Fast, memory-efficient counting of k-mers in DNA

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Latest i386
Package filename Jellyfish-2.2.10_7.txz
Package name Jellyfish
Package version 2.2.10
Package release 7
Package architecture i386
Package type txz
Category biology
Homepage http://www.genome.umd.edu/jellyfish.html
License GPLv3+
Maintainer jwb@FreeBSD.org
Download size 271.60 KB
Installed size 1.14 MB
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
A k-mer is a substring of length k, and counting the occurrences of all such
substrings is a central step in many analyses of DNA sequence. JELLYFISH can
count k-mers quickly by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase parallelism.
WWW: http://www.genome.umd.edu/jellyfish.html
Options:
- NLS: on

Alternatives

Package Version Architecture Repository
Jellyfish-2.2.10_7.txz 2.2.10 amd64 FreeBSD Ports Latest
Jellyfish-2.2.10_7.txz 2.2.10 i386 FreeBSD Ports Quarterly
Jellyfish-2.2.10_7.txz 2.2.10 amd64 FreeBSD Ports Quarterly
Jellyfish - - -

Requires

Name Value
gettext-runtime = 0.20.1
htslib = 1.9
libhts.so.2 -

Provides

Name Value
libjellyfish-2.0.so.2 -

Download

Type URL
Mirror pkg.freebsd.org
Binary Package Jellyfish-2.2.10_7.txz
Source Package biology/jellyfish

Install Howto

Install Jellyfish txz package:

# pkg install Jellyfish

See Also

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MetaPhysicL-0.6.0.txz Metaprogramming, operator-overloaded classes for numerical simulations
MolScript-2.1.2_1.txz Display 3D molecules in schematic and detailed representations
Mowitz-0.2.1_5.txz This is the Mowitz ("More widgets") library
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