CheckM-1.0.18.txz


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Description

CheckM - Quality assessment tool for the microbial genomes

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Latest i386
Package filename CheckM-1.0.18.txz
Package name CheckM
Package version 1.0.18
Package release -
Package architecture i386
Package type txz
Category biology python
Homepage https://ecogenomics.github.io/CheckM/
License GPLv3
Maintainer yuri@FreeBSD.org
Download size 197.64 KB
Installed size 1.23 MB
CheckM provides a set of tools for assessing the quality of genomes recovered
from isolates, single cells, or metagenomes. It provides robust estimates of
genome completeness and contamination by using collocated sets of genes that
are ubiquitous and single-copy within a phylogenetic lineage. Assessment of
genome quality can also be examined using plots depicting key genomic
characteristics (e.g., GC, coding density) which highlight sequences outside
the expected distributions of a typical genome. CheckM also provides tools for
identifying genome bins that are likely candidates for merging based on marker
set compatibility, similarity in genomic characteristics, and proximity within
a reference genome tree.
WWW: https://ecogenomics.github.io/CheckM/

Alternatives

Package Version Architecture Repository
CheckM-1.0.18.txz 1.0.18 amd64 FreeBSD Ports Latest
CheckM-1.0.18.txz 1.0.18 i386 FreeBSD Ports Quarterly
CheckM-1.0.18.txz 1.0.18 amd64 FreeBSD Ports Quarterly
CheckM - - -

Requires

Name Value
py36-DendroPy = 4.4.0
py36-matplotlib = 2.2.4_1
py36-numpy = 1.16.4_1,1
py36-pysam = 0.15.2
py36-scipy = 1.2.2_1
py36-setuptools = 41.1.0
python36 = 3.6.9

Download

Type URL
Mirror pkg.freebsd.org
Binary Package CheckM-1.0.18.txz
Source Package biology/checkm

Install Howto

Install CheckM txz package:

# pkg install CheckM

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