trimadap - Trim adapter sequences from Illumina data using heuristic rules

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Latest amd64
Package filename trimadap-0.1.3.txz
Package name trimadap
Package version 0.1.3
Package release -
Package architecture amd64
Package type txz
Category biology
License GPLv2
Download size 17.88 KB
Installed size 48.94 KB
Trimadap is a small tool to trim adapter sequences from Illumina data. It
performs SSE2-SW between each read and each adapter sequence and identifies
adapter sequences with a few heuristic rules which can be found in the
ta_trim1() function in trimadap-mt.c. The default adapters it uses are included
in illumina.txt. These are typical Illumina adapters from paired-end


Package Version Architecture Repository
trimadap-0.1.3.txz 0.1.3 i386 FreeBSD Ports Quarterly
trimadap-0.1.3.txz 0.1.3 amd64 FreeBSD Ports Quarterly
trimadap-0.1.3.txz 0.1.3 i386 FreeBSD Ports Latest
trimadap - - -


Type URL
Binary Package trimadap-0.1.3.txz
Source Package biology/trimadap

Install Howto

Install trimadap txz package:

# pkg install trimadap

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