seqtools-4.44.1_4.txz


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Description

seqtools - Tools for visualising sequence alignments

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Latest amd64
Package filename seqtools-4.44.1_4.txz
Package name seqtools
Package version 4.44.1
Package release 4
Package architecture amd64
Package type txz
Category biology
Homepage http://www.sanger.ac.uk/science/tools/seqtools
License GPLv3
Maintainer pi@FreeBSD.org
Download size 3.71 MB
Installed size 12.51 MB
A suite of tools for visualising sequence alignments.
Blixem is an interactive browser of pairwise alignments that have
been stacked up in a "master-slave" multiple alignment; it is not
a 'true' multiple alignment but a 'one-to-many' alignment.
Belvu is a multiple sequence alignment viewer and phylogenetic tool.
It has an extensive set of user-configurable modes to color residues
by conservation or by residue type, and some basic alignment editing
capabilities.
Dotter is a graphical dot-matrix program for detailed comparison
of two sequences. Every residue in one sequence is compared to every
residue in the other, with one sequence plotted on the x-axis and
the other on the y-axis.
WWW: http://www.sanger.ac.uk/science/tools/seqtools
Options:
- DOCS: on

Alternatives

Package Version Architecture Repository
seqtools-4.44.1_4.txz 4.44.1 i386 FreeBSD Ports Latest
seqtools-4.44.1_4.txz 4.44.1 i386 FreeBSD Ports Quarterly
seqtools-4.44.1_4.txz 4.44.1 amd64 FreeBSD Ports Quarterly
seqtools - - -

Requires

Name Value
atk = 2.28.1
cairo = 1.16.0,2
curl = 7.65.3
fontconfig = 2.12.6,1
freetype2 = 2.10.1
gdk-pixbuf2 = 2.38.1
gettext-runtime = 0.20.1
glib = 2.56.3_6,1
gtk2 = 2.24.32
libX11 = 1.6.8,1
libatk-1.0.so.0 -
libcairo.so.2 -
libcurl.so.4 -
libfontconfig.so.1 -
libfreetype.so.6 -
libgdk-x11-2.0.so.0 -
libgdk_pixbuf-2.0.so.0 -
libgio-2.0.so.0 -
libglib-2.0.so.0 -
libgobject-2.0.so.0 -
libgtk-x11-2.0.so.0 -
libintl.so.8 -
libpango-1.0.so.0 -
libpangocairo-1.0.so.0 -
libpangoft2-1.0.so.0 -
libsqlite3.so.0 -
pango = 1.42.4_3
sqlite3 = 3.29.0

Download

Type URL
Mirror pkg.freebsd.org
Binary Package seqtools-4.44.1_4.txz
Source Package biology/seqtools

Install Howto

Install seqtools txz package:

# pkg install seqtools

See Also

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serendipity-2.1.4_1.txz PHP based weblog software
serf-1.3.9_3.txz Serf HTTP client library
serialmail-0.75_3.txz Tools for passing mail across serial links
serialoverip-1.0.txz Transport of serial interfaces over UDP/IP
serveez-0.2.2_3.txz Server framework
servingxml-1.1.2.txz Framework for flat/XML data transformations
servlet-api-2.5_3.txz The Servlet API
sessreg-1.1.2.txz Manage utmp/wtmp entries for non-init X clients
setaudit-1.0.3.txz Tool to specify audit configurations on a process
setcdboot-1.0.txz Mark a file bootable within a DEC Alpha ISO-9660 image
setlayout-20080210.txz Arrange desktops in an MxN grid layout
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