samtools-1.9.txz


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Description

samtools - Tools for manipulating next-generation sequencing data

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Latest amd64
Package filename samtools-1.9.txz
Package name samtools
Package version 1.9
Package release -
Package architecture amd64
Package type txz
Category biology
Homepage http://www.htslib.org/
License MIT
Maintainer cartwright@asu.edu
Download size 278.53 KB
Installed size 839.93 KB
Samtools implements various utilities for post-processing alignments in the
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.
WWW: http://www.htslib.org/
The miscellaneous tools included with Samtools have been installed to
/usr/local/bin/samtools_misc
Add that directory to your path if you want to use these tools.
Some of these tools depend on Perl5/Python, and it will need to be installed to
use them.

Alternatives

Package Version Architecture Repository
samtools-1.9.txz 1.9 i386 FreeBSD Ports Quarterly
samtools-1.9.txz 1.9 amd64 FreeBSD Ports Quarterly
samtools-1.9.txz 1.9 i386 FreeBSD Ports Latest
samtools - - -

Requires

Name Value
htslib = 1.9
libhts.so.2 -

Download

Type URL
Mirror pkg.freebsd.org
Binary Package samtools-1.9.txz
Source Package biology/samtools

Install Howto

Install samtools txz package:

# pkg install samtools

See Also

Package Description
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sandsifter-1.04.txz Processor fuzzer for x86 CPUs
sane-backends-1.0.28.txz API for access to scanners, digitals camera, frame grabbers etc
sane-frontends-1.0.14_10.txz Tools for access to scanners, digitals camera, frame grabbers etc
sanoid-2.0.3.txz Policy-driven snapshot management and replication tools
sanoid-devel-1.0.0.20191105.txz Policy-driven snapshot management and replication tools
sansi-1.0.2.txz Removes ANSI control sequences/characters, from files
saoimage-1.35.1_2.txz Smithsonian Astrophysical Observatory image utility for X
sarep-1.1.txz Command-line search and replace tool; written in Perl; handles regexps
sarg-2.4.0.txz Squid log analyzer and HTML report generator
sarien-0.7.0_3.txz Sierra AGI games interpreter
sary-1.2.0_5.txz Suffix array library and tools, which provide fast full-text search
sash-3.8.txz Stand-Alone shell combining many common utilities
sasp-0.1_4.txz Tool that permits to use a gateway whatever IP we have
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