rainbow - Efficient clustering and assembling of short reads, especially for RAD

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Latest amd64
Package name rainbow
Package version 2.0.4
Package architecture amd64
Package type txz
Installed size 156.75 KB
Download size 42.14 KB
Official Mirror pkg.freebsd.org
Rainbow provides an ultra-fast and memory-efficient solution to clustering and
assembling short genetic sequence reads produced by Restriction site Associated
DNA Sequencing (RAD-seq).  It does this by, first, clustering reads using a
spaced seed method, then it divides potential groups into haplotypes in a
top-down manner.  Next, along a guide tree, it iteratively merges sibling
leaves in a bottom-up manner if they are similar enough.  Finally, Rainbow uses
a greedy algorithm to locally assemble merged reads into contigs.  Both optimal
and suboptimal assembly results are output.
WWW: http://sourceforge.net/projects/bio-rainbow/
Categories: biology
Maintainer: jwb@FreeBSD.org


Package Version Architecture Repository
rainbow-2.0.4.txz 2.0.4 i386 FreeBSD Ports Latest
rainbow-2.0.4.txz 2.0.4 amd64 FreeBSD Ports Quarterly
rainbow-2.0.4.txz 2.0.4 i386 FreeBSD Ports Quarterly
rainbow - - -


Type URL
Binary Package rainbow-2.0.4.txz
Source Package biology/rainbow

Install Howto

Install rainbow txz package:

# pkg install rainbow

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