hmmer - Profile hidden Markov models for biological sequence analysis

Property Value
Distribution FreeBSD 12
Repository FreeBSD Ports Latest amd64
Package filename hmmer-3.2.1_1.txz
Package name hmmer
Package version 3.2.1
Package release 1
Package architecture amd64
Package type txz
Category biology
Download size 1.83 MB
Installed size 12.72 MB
HMMER is an implementation of profile hidden Markov model methods for
sensitive searches of biological sequence databases using multiple sequence
alignments as queries.
Given a multiple sequence alignment as input, HMMER builds a statistical
model called a "hidden Markov model" which can then be used as a query into
a sequence database to find (and/or align) additional homologues of the
sequence family.
- DOCS: on
- TEST: off
HMMER reads three optional environment variables:
HMMERDB  - directory location of HMM databases (e.g. PFAM)
BLASTDB  - directory location of FASTA-formatted sequence databases
BLASTMAT - directory location of PAM scoring matrices
The BLASTDB and BLASTMAT variables are shared with versions of BLAST such
as NCBI BLAST 2.0 (contained in the biology/ncbi-toolkit port).  If these
variables are set, you do not have to specify the full path to your
databases on the command line when using HMMER.
Please see the documentation for more information.


Package Version Architecture Repository
hmmer-3.2.1_1.txz 3.2.1 i386 FreeBSD Ports Latest
hmmer-3.2.1_1.txz 3.2.1 i386 FreeBSD Ports Quarterly
hmmer-3.2.1_1.txz 3.2.1 amd64 FreeBSD Ports Quarterly
hmmer - - -


Type URL
Binary Package hmmer-3.2.1_1.txz
Source Package biology/hmmer

Install Howto

Install hmmer txz package:

# pkg install hmmer

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