cufflinks-2.2.1.83_1.txz


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Description

cufflinks - Cufflinks assembles transcripts, estimates their abundance, etc

Property Value
Distribution FreeBSD 11
Repository FreeBSD Ports Latest i386
Package filename cufflinks-2.2.1.83_1.txz
Package name cufflinks
Package version 2.2.1.83
Package release 1
Package architecture i386
Package type txz
Category biology
Homepage http://cole-trapnell-lab.github.io/cufflinks/
License BSL
Maintainer yuri@FreeBSD.org
Download size 1.15 MB
Installed size 8.74 MB
Cufflinks assembles transcripts, estimates their abundances, and tests for
differential expression and regulation in RNA-Seq samples. It accepts aligned
RNA-Seq reads and assembles the alignments into a parsimonious set of
transcripts. Cufflinks then estimates the relative abundances of these
transcripts based on how many reads support each one, taking into account biases
in library preparation protocols.
Cufflinks was originally developed as part of a collaborative effort between the
Laboratory for Mathematical and Computational Biology, led by Lior Pachter at UC
Berkeley, Steven Salzberg's computational genomics group at the Institute of
Genetic Medicine at Johns Hopkins University, and Barbara Wold's lab at Caltech.
The project is now maintained by Cole Trapnell's lab at the University of
Washington.
WWW: http://cole-trapnell-lab.github.io/cufflinks/

Alternatives

Package Version Architecture Repository
cufflinks-2.2.1.83_1.txz 2.2.1.83 amd64 FreeBSD Ports Latest
cufflinks-2.2.1.83_1.txz 2.2.1.83 i386 FreeBSD Ports Quarterly
cufflinks-2.2.1.83_1.txz 2.2.1.83 amd64 FreeBSD Ports Quarterly
cufflinks - - -

Requires

Name Value
boost-libs = 1.71.0
htslib = 1.9
libboost_filesystem.so.1.71.0 -
libboost_serialization.so.1.71.0 -
libboost_system.so.1.71.0 -
libboost_thread.so.1.71.0 -
libhts.so.2 -
python36 = 3.6.9

Download

Type URL
Mirror pkg.freebsd.org
Binary Package cufflinks-2.2.1.83_1.txz
Source Package biology/cufflinks

Install Howto

Install cufflinks txz package:

# pkg install cufflinks

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