canu-1.8_5.txz


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Description

canu - Single molecule sequence assembler

Property Value
Distribution FreeBSD 11
Repository FreeBSD Ports Latest i386
Package filename canu-1.8_5.txz
Package name canu
Package version 1.8
Package release 5
Package architecture i386
Package type txz
Category biology java perl5
Homepage https://canu.readthedocs.io/
License GPLv2
Maintainer jwb@FreeBSD.org
Download size 2.16 MB
Installed size 10.36 MB
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule
sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
Detect overlaps in high-noise sequences using MHAP
Generate corrected sequence consensus
Trim corrected sequences
Assemble trimmed corrected sequences
WWW: https://canu.readthedocs.io/

Alternatives

Package Version Architecture Repository
canu-1.8_5.txz 1.8 amd64 FreeBSD Ports Latest
canu-1.8_5.txz 1.8 i386 FreeBSD Ports Quarterly
canu-1.8_5.txz 1.8 amd64 FreeBSD Ports Quarterly
canu - - -

Requires

Name Value
boost-libs = 1.71.0
gcc9 = 9.2.0
gnuplot = 5.2.7_1
libgcc_s.so.1 -
libgomp.so.1 -
libstdc++.so.6 -
openjdk8 = 8.222.10.1_1
perl5 = 5.30.0

Download

Type URL
Mirror pkg.freebsd.org
Binary Package canu-1.8_5.txz
Source Package biology/canu

Install Howto

Install canu txz package:

# pkg install canu

See Also

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