viennarna-2.4.13_1.txz


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Description

viennarna - Alignment tools for the structural analysis of RNA

Property Value
Distribution FreeBSD 11
Repository FreeBSD Ports Latest amd64
Package filename viennarna-2.4.13_1.txz
Package name viennarna
Package version 2.4.13
Package release 1
Package architecture amd64
Package type txz
Category biology
Homepage https://github.com/s-will/LocARNA
License ViennaRNALicense
Maintainer yuri@FreeBSD.org
Download size 10.09 MB
Installed size 80.43 MB
LocARNA is a collection of alignment tools for the structural analysis of RNA.
Given a set of RNA sequences, LocARNA simultaneously aligns and predicts common
structures for your RNAs. In this way, LocARNA performs Sankoff-like alignment
and is in particular suited for analyzing sets of related RNAs without known
common structure.
LocARNA distinguishes itself from many other Sankoff-style multiple alignment
programs by its performance and low memory complexity, high accuracy, and
richness of features. As unique features, it offers structure-local alignment,
flexible structure and anchor constraints, and provides efficient computation of
reliabilities in sequence-structure alignment. The package offers a robust core
of features and is used as experimental platform for the incorporation of new
features in RNA sequence-structure alignment.
WWW: https://github.com/s-will/LocARNA
Options:
- DOCS: on
- EXAMPLES: on

Alternatives

Package Version Architecture Repository
viennarna-2.4.13_1.txz 2.4.13 i386 FreeBSD Ports Latest
viennarna-2.4.13.txz 2.4.13 amd64 FreeBSD Ports Quarterly
viennarna-2.4.13.txz 2.4.13 i386 FreeBSD Ports Quarterly
viennarna - - -

Requires

Name Value
gmp = 6.1.2_1
gsl = 2.5_1
indexinfo = 0.3.1
libX11 = 1.6.8,1
libXext = 1.3.4,1
libgmp.so.10 -
libgsl.so.23 -
libgslcblas.so.0 -
libmpfr.so.6 -
mpfr = 4.0.2
perl5 = 5.28.2

Download

Type URL
Mirror pkg.freebsd.org
Binary Package viennarna-2.4.13_1.txz
Source Package biology/viennarna

Install Howto

Install viennarna txz package:

# pkg install viennarna

See Also

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vigra-1.11.1_5.txz VIGRA stands for "Vision with Generic Algorithms"
vii-4.2_5.txz Execute a command repeatedly and scroll the output
vile-9.8t.txz VI Like Emacs -- console version
vils-20020228_1.txz Use your favorite editor to rename files
vim-8.1.1954.txz Improved version of the vi editor
vim-console-8.1.1954.txz Improved version of the vi editor (console only)
vim-tiny-8.1.1954.txz Improved version of the vi editor (vim binary only)
vimb-3.5.0.txz Vim like browser
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