t_coffee-9.03_11.txz


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Description

t_coffee - Multiple DNA or protein sequence alignment package

Property Value
Distribution FreeBSD 11
Repository FreeBSD Ports Latest amd64
Package filename t_coffee-9.03_11.txz
Package name t_coffee
Package version 9.03
Package release 11
Package architecture amd64
Package type txz
Category biology
Homepage http://www.tcoffee.org/
License GPLv2
Maintainer ports@FreeBSD.org
Download size 1.22 MB
Installed size 6.80 MB
From the website:
T-Coffee is a multiple sequence alignment package. Given a set of sequences
(Proteins or DNA), T-Coffee generates a multiple sequence alignment.
Related publications:
- 3DCoffee: Combining Protein Sequences and Structures within Multiple
Sequence Alignments.
O. O'Sullivan, K Suhre, C. Abergel, D.G. Higgins, C. Notredame.
Journal of Molecular Biology, Vol 340, pp385-395, 2004
- T-Coffee: A novel method for multiple sequence alignments.  C.Notredame,
D. Higgins, J. Heringa, Journal of Molecular Biology,Vol 302,
pp205-217,2000
- COFFEE: A New Objective Function For Multiple Sequence Alignmnent.
C.  Notredame, L. Holme and D.G. Higgins,Bioinformatics,Vol 14 (5)
407-422,1998
WWW: http://www.tcoffee.org/
Options:
- EXAMPLES: on
===>   NOTICE:
The t_coffee port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:
https://bugs.freebsd.org/bugzilla
More information about port maintainership is available at:
https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

Alternatives

Package Version Architecture Repository
t_coffee-9.03_11.txz 9.03 i386 FreeBSD Ports Latest
t_coffee-9.03_10.txz 9.03 amd64 FreeBSD Ports Quarterly
t_coffee-9.03_10.txz 9.03 i386 FreeBSD Ports Quarterly
t_coffee - - -

Requires

Name Value
clustalw = 2.1_2
gcc9 = 9.1.0_1
libgfortran.so.5 -
libquadmath.so.0 -

Download

Type URL
Mirror pkg.freebsd.org
Binary Package t_coffee-9.03_11.txz
Source Package biology/t_coffee

Install Howto

Install t_coffee txz package:

# pkg install t_coffee

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