tRNAscan-SE-2.0.3.txz


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Description

tRNAscan-SE - Searching for tRNA genes in genomic sequence

Property Value
Distribution FreeBSD 11
Repository FreeBSD Ports Latest amd64
Package filename tRNAscan-SE-2.0.3.txz
Package name tRNAscan-SE
Package version 2.0.3
Package release -
Package architecture amd64
Package type txz
Category biology
Homepage http://lowelab.ucsc.edu/tRNAscan-SE/
License GPLv3+
Maintainer mzaki@niid.go.jp
Download size 2.37 MB
Installed size 17.94 MB
tRNAscan-SE was written in the PERL (version 5.0) script language.
Input consists of DNA or RNA sequences in FASTA format.  tRNA
predictions are output in standard tabular or ACeDB format.
tRNAscan-SE does no tRNA detection itself, but instead combines the
strengths of three independent tRNA prediction programs by negotiating
the flow of information between them, performing a limited amount of
post-processing, and outputting the results in one of several
formats.
WWW: http://lowelab.ucsc.edu/tRNAscan-SE/

Alternatives

Package Version Architecture Repository
tRNAscan-SE-2.0.3.txz 2.0.3 amd64 FreeBSD Ports Quarterly
tRNAscan-SE-2.0.3.txz 2.0.3 i386 FreeBSD Ports Quarterly
tRNAscan-SE-2.0.3.txz 2.0.3 i386 FreeBSD Ports Latest
tRNAscan-SE - - -

Requires

Name Value
infernal = 1.1.2
perl5 = 5.28.2

Download

Type URL
Mirror pkg.freebsd.org
Binary Package tRNAscan-SE-2.0.3.txz
Source Package biology/tRNAscan-SE

Install Howto

Install tRNAscan-SE txz package:

# pkg install tRNAscan-SE

See Also

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