stacks - Software pipeline for building loci from short-read sequences

Property Value
Distribution FreeBSD 11
Repository FreeBSD Ports Latest amd64
Package filename stacks-2.4_1.txz
Package name stacks
Package version 2.4
Package release 1
Package architecture amd64
Package type txz
Category biology perl5 python
License GPLv2
Download size 1.20 MB
Installed size 7.19 MB
Stacks is a software pipeline for building loci from short-read sequences, such
as those generated on the Illumina platform. Stacks was developed to work with
restriction enzyme-based data, such as RAD-seq, for the purpose of building
genetic maps and conducting population genomics and phylogeography.


Package Version Architecture Repository
stacks-2.4_1.txz 2.4 i386 FreeBSD Ports Latest
stacks-2.4_1.txz 2.4 i386 FreeBSD Ports Quarterly
stacks-2.4_1.txz 2.4 amd64 FreeBSD Ports Quarterly
stacks - - -


Name Value
gcc9 = 9.1.0_1 - - -
python36 = 3.6.9


Type URL
Binary Package stacks-2.4_1.txz
Source Package biology/stacks

Install Howto

Install stacks txz package:

# pkg install stacks

See Also

Package Description
staf-3.4.26_1.txz Software Testing Automation Framework
stagit-0.9.2.txz Static Git page generator
stalepid-1.0.2.txz Check for stale pid files and remove them
stalonetray-0.8.3.txz STAnd-aLONE system tray
stamp-2.0.8_11.txz Adds a graphical, configurable timestamp to a grayscale image
stanchion-2.1.0_2.txz Open source database cluster control for Riak
star-1.6_1.txz Unique standard tape archiver with many enhancements
stardates-1.6.1.txz Displays date in 5 formats (including stardate of course)
stardict-3.0.6_4.txz Dictionary lookup program written in Gtk2
stardict-dict-fa_IR-1.0.0.txz English-Persian dictionary for stardict
stardict-dictd_mova-2.4.2_8.txz Dictionaries from for StarDict
stardict-quick-2.4.2_9.txz Dictionaries from Quick for StarDict
stardict-rptts-2.1.0.txz Real People TTS for StarDict
starfighter- Liberate the universe from the evil company WEAPCO
starlanes-1.2.2.txz Classic space-age stock trading game