py36-pyfaidx-0.5.5.2_1.txz


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Description

py36-pyfaidx - Efficient pythonic random access to fasta subsequences

Property Value
Distribution FreeBSD 11
Repository FreeBSD Ports Latest amd64
Package filename py36-pyfaidx-0.5.5.2_1.txz
Package name py36-pyfaidx
Package version 0.5.5.2
Package release 1
Package architecture amd64
Package type txz
Category biology python
Homepage https://github.com/mdshw5/pyfaidx
License BSD3CLAUSE
Maintainer yuri@FreeBSD.org
Download size 37.31 KB
Installed size 188.22 KB
FASTA is a format to exchange generic information, partial or of the entire
organism.
A function "faidx" (FAsta InDeX) creates a small flat index file ".fai" allowing
for fast random access to any subsequence in the indexed FASTA file, while
loading a minimal amount of the file in to memory. This python module implements
pure Python classes for indexing, retrieval, and in-place modification of FASTA
files using a samtools compatible index. The pyfaidx module is API compatible
with the pygr seqdb module. A command-line script "faidx" is installed alongside
the pyfaidx module, and facilitates complex manipulation of FASTA files without
any programming knowledge.
WWW: https://github.com/mdshw5/pyfaidx

Alternatives

Package Version Architecture Repository
py36-pyfaidx-0.5.5.2_1.txz 0.5.5.2 amd64 FreeBSD Ports Quarterly
py36-pyfaidx-0.5.5.2_1.txz 0.5.5.2 i386 FreeBSD Ports Quarterly
py36-pyfaidx-0.5.5.2_1.txz 0.5.5.2 i386 FreeBSD Ports Latest
py36-pyfaidx - - -

Requires

Name Value
py36-setuptools = 41.0.0
py36-six = 1.12.0
python36 = 3.6.8_2

Download

Type URL
Mirror pkg.freebsd.org
Binary Package py36-pyfaidx-0.5.5.2_1.txz
Source Package biology/py-pyfaidx

Install Howto

Install py36-pyfaidx txz package:

# pkg install py36-pyfaidx

See Also

Package Description
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