py36-biom-format - Biological Observation Matrix (BIOM) Format Project

Property Value
Distribution FreeBSD 11
Repository FreeBSD Ports Latest amd64
Package filename py36-biom-format-2.1.7_3.txz
Package name py36-biom-format
Package version 2.1.7
Package release 3
Package architecture amd64
Package type txz
Category biology python
Download size 8.17 MB
Installed size 51.66 MB
The BIOM file format (canonically pronounced biome) is designed to be a
general-use format for representing biological sample by observation contingency
tables. BIOM is a recognized standard for the Earth Microbiome Project and is a
Genomics Standards Consortium supported project.
The BIOM format is designed for general use in broad areas of comparative
-omics. For example, in marker-gene surveys, the primary use of this format is
to represent OTU tables: the observations in this case are OTUs and the matrix
contains counts corresponding to the number of times each OTU is observed in
each sample. With respect to metagenome data, this format would be used to
represent metagenome tables: the observations in this case might correspond to
SEED subsystems, and the matrix would contain counts corresponding to the number
of times each subsystem is observed in each metagenome. Similarly, with respect
to genome data, this format may be used to represent a set of genomes: the
observations in this case again might correspond to SEED subsystems, and the
counts would correspond to the number of times each subsystem is observed in
each genome.


Package Version Architecture Repository
py36-biom-format-2.1.7_3.txz 2.1.7 i386 FreeBSD Ports Latest
py36-biom-format-2.1.7_3.txz 2.1.7 i386 FreeBSD Ports Quarterly
py36-biom-format-2.1.7_3.txz 2.1.7 amd64 FreeBSD Ports Quarterly
py36-biom-format - - -


Name Value -
py36-click = 7.0
py36-future = 0.17.1_1
py36-h5py = 2.9.0_2
py36-numpy = 1.16.4_1,1
py36-pandas = 0.24.2_1
py36-scipy = 1.2.2_1
py36-setuptools = 41.0.1
py36-six = 1.12.0
python36 = 3.6.9


Type URL
Binary Package py36-biom-format-2.1.7_3.txz
Source Package biology/py-biom-format

Install Howto

Install py36-biom-format txz package:

# pkg install py36-biom-format

See Also

Package Description
py36-biopython-1.73_1.txz Collection of Python modules for bioinformatics
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py36-bitarray-0.8.1_1.txz Efficient arrays of booleans
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py36-bitrot-0.9.2.txz Utility to detect data corruption and bit rot
py36-bitstring-3.1.5.txz Simple construction, analysis, and modification of binary data
py36-bitvector-3.4.9.txz Pure-Python memory-efficient packed representation for bit arrays
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