py27-bx-python-0.8.4_1.txz


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Description

py27-bx-python - Python module for reading, manipulating and writing genomic data sets

Property Value
Distribution FreeBSD 11
Repository FreeBSD Ports Latest amd64
Package filename py27-bx-python-0.8.4_1.txz
Package name py27-bx-python
Package version 0.8.4
Package release 1
Package architecture amd64
Package type txz
Category biology python
Homepage https://github.com/bxlab/bx-python
License MIT
Maintainer yuri@FreeBSD.org
Download size 786.27 KB
Installed size 4.24 MB
bx-python is a python library and associated set of scripts to allow for rapid
implementation of genome scale analyses. The library contains a variety of
useful modules, but the particular strengths are:
Classes for reading and working with genome-scale multiple local alignments
(in MAF, AXT, and LAV formats). Generic data structure for indexing on disk
files that contain blocks of data associated with intervals on various
sequences (used, for example, to provide random access to individual
alignments in huge files; optomized for use over network filesystems).
Data structures for working with intervals on sequences:
* "Binned bitsets" which act just like chromosome sized bit arrays,
but lazily allocate regions and allow large blocks of all set or
all unset bits to be stored compactly
* "Intersecter" for performing fast intersection tests that preserve
both query and target intervals and associated annotation
WWW: https://github.com/bxlab/bx-python

Alternatives

Package Version Architecture Repository
py27-bx-python-0.8.4_1.txz 0.8.4 i386 FreeBSD Ports Latest
py27-bx-python-0.8.4_1.txz 0.8.4 i386 FreeBSD Ports Quarterly
py27-bx-python-0.8.4_1.txz 0.8.4 amd64 FreeBSD Ports Quarterly
py27-bx-python - - -

Requires

Name Value
libpython2.7.so.1 -
py27-numpy = 1.16.4_1,1
py27-python-lzo = 1.12
py27-setuptools = 41.0.1
python27 = 2.7.16_1

Download

Type URL
Mirror pkg.freebsd.org
Binary Package py27-bx-python-0.8.4_1.txz
Source Package biology/py-bx-python

Install Howto

Install py27-bx-python txz package:

# pkg install py27-bx-python

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