muscle-3.8.31.txz


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Description

muscle - MUltiple Sequence Comparison by Log-Expectation

Property Value
Distribution FreeBSD 11
Repository FreeBSD Ports Latest amd64
Package filename muscle-3.8.31.txz
Package name muscle
Package version 3.8.31
Package release -
Package architecture amd64
Package type txz
Category biology
Homepage http://www.drive5.com/muscle/
License -
Maintainer mzaki@m.u-tokyo.ac.jp
Download size 135.59 KB
Installed size 400.42 KB
MUSCLE is multiple alignment software for protein and nucleotide sequences.
The name stands for multiple sequence comparison by log-expectation.
A range of options is provided that give you the choice of optimizing
accuracy, speed, or some compromise between the two. Default parameters are
those that give the best average accuracy in the published tests. MUSCLE
can achieve both better average accuracy and better speed than CLUSTALW or
T-Coffee, depending on the chosen options.
Citation:
Edgar, R. C. (2004) MUSCLE: multiple sequence alignment with high accuracy
and high throughput. Nucleic Acids Research 32(5): 1792-1797.
Edgar, R. C. (2004) MUSCLE: a multiple sequence alignment method with
reduced time and space complexity. BMC Bioinformatics 5(1): 113.
The NAR paper gives only a brief overview of the algorithm and
implementation details. For a full discussion of the method and many of
the non-default options that it offers, please see the BMC paper.
WWW: http://www.drive5.com/muscle/

Alternatives

Package Version Architecture Repository
muscle-3.8.31.txz 3.8.31 i386 FreeBSD Ports Quarterly
muscle-3.8.31.txz 3.8.31 amd64 FreeBSD Ports Quarterly
muscle-3.8.31.txz 3.8.31 i386 FreeBSD Ports Latest
muscle - - -

Download

Type URL
Mirror pkg.freebsd.org
Binary Package muscle-3.8.31.txz
Source Package biology/muscle

Install Howto

Install muscle txz package:

# pkg install muscle

See Also

Package Description
muse-0.2.txz Shows memory usage data
muse-emacs26-3.20_14.txz Authoring and publishing environment for Emacs
muse-emacs26_canna-3.20_14.txz Authoring and publishing environment for Emacs
muse-emacs26_nox-3.20_14.txz Authoring and publishing environment for Emacs
muse-emacs27-3.20_14.txz Authoring and publishing environment for Emacs
muse-emacs27_nox-3.20_14.txz Authoring and publishing environment for Emacs
muse-sequencer-3.1.0.p1.20_2.txz Digital audio workstation (DAW) with support for both Audio and MIDI
musepack-2011.08.10.txz Decoder, encoder, and replaygain for musepack (mpc)
musescore-3.2.3.txz Free music composition & notation software
musicbox-tag-editor-0.2.3_17.txz Simple GTK+ audio tag editor
musiccontrol-0.3_2.txz Advanced music player
musicpc-0.32.txz Command line client for the musicpd
musicpd-0.21.15_2.txz Remote-controllable music daemon
musikcube-0.65.1_3.txz Terminal-based music player, audio engine, metadata indexer, server
mussh-1.0_1.txz Tool for easily running the same commands on multiple hosts
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