HipMCL-g20180814_3.txz


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Description

HipMCL - High-performance parallel algorithm for large-scale network clustering

Property Value
Distribution FreeBSD 11
Repository FreeBSD Ports Latest amd64
Package filename HipMCL-g20180814_3.txz
Package name HipMCL
Package version g20180814
Package release 3
Package architecture amd64
Package type txz
Category math
Homepage https://bitbucket.org/azadcse/hipmcl/wiki/Home
License BSD3CLAUSE
Maintainer yuri@FreeBSD.org
Download size 168.52 KB
Installed size 583.15 KB
HipMCL is a high-performance parallel algorithm for large-scale network
clustering. HipMCL parallelizes popular Markov Cluster (MCL) algorithm that has
been shown to be one of the most successful and widely used algorithms for
network clustering. It is based on random walks and was initially designed to
detect families in protein-protein interaction networks. Despite MCL's
efficiency and multi-threading support, scalability remains a bottleneck as it
fails to process networks of several hundred million nodes and billion edges in
an affordable running time. HipMCL overcomes all of these challenges by
developing massively-parallel algorithms for all components of MCL. HipMCL can
be 1000 times faster than the original MCL without any information loss. It can
easily cluster a network of ~75 million nodes with ~68 billion edges in ~2.4
hours using ~2000 nodes of Cori supercomputer at NERSC. HipMCL is developed in
C++ language and uses standard OpenMP and MPI libraries for shared- and
distributed-memory parallelization.
WWW: https://bitbucket.org/azadcse/hipmcl/wiki/Home

Alternatives

Package Version Architecture Repository
HipMCL-g20180814_3.txz g20180814 i386 FreeBSD Ports Latest
HipMCL-g20180814_3.txz g20180814 i386 FreeBSD Ports Quarterly
HipMCL-g20180814_3.txz g20180814 amd64 FreeBSD Ports Quarterly
HipMCL - - -

Requires

Name Value
CombBLAS = 1.6.2_4
gcc9 = 9.2.0
libCombBLAS.so.1.16.0 -
libgcc_s.so.1 -
libmpi.so.12 -
libmpicxx.so.12 -
libomp.so -
mpich = 3.2.1_5
openmp = 9.0.0

Download

Type URL
Mirror pkg.freebsd.org
Binary Package HipMCL-g20180814_3.txz
Source Package math/hipmcl

Install Howto

Install HipMCL txz package:

# pkg install HipMCL

See Also

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