samtools-1.9.txz


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Description

samtools - Tools for manipulating next-generation sequencing data

Property Value
Distribution FreeBSD 10
Repository FreeBSD Ports Quarterly i386
Package name samtools
Package version 1.9
Package architecture i386
Package type txz
Installed size 690.05 KB
Download size 248.71 KB
Official Mirror pkg.freebsd.org
Samtools implements various utilities for post-processing alignments in the
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.
WWW: http://www.htslib.org/
Categories: biology
Maintainer: cartwright@asu.edu
The miscellaneous tools included with Samtools have been installed to
/usr/local/bin/samtools_misc
Add that directory to your path if you want to use these tools.
Some of these tools depend on Perl5/Python, and it will need to be installed to
use them.

Alternatives

Package Version Architecture Repository
samtools-1.9.txz 1.9 amd64 FreeBSD Ports Quarterly
samtools-1.9.txz 1.9 amd64 FreeBSD Ports Latest
samtools-1.9.txz 1.9 i386 FreeBSD Ports Latest
samtools - - -

Requires

Name Value
htslib = 1.9
libhts.so.2 -

Download

Type URL
Binary Package samtools-1.9.txz
Source Package biology/samtools

Install Howto

Install samtools txz package:

# pkg install samtools

See Also

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