emboss-6.6.0_3.txz


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Description

emboss - Collection of open source tools for genetic sequence analysis

Property Value
Distribution FreeBSD 10
Repository FreeBSD Ports Latest amd64
Package name emboss
Package version 6.6.0
Package release 3
Package architecture amd64
Package type txz
Installed size 499.95 MB
Download size 69.92 MB
Official Mirror pkg.freebsd.org
The European Molecular Biology Open Software Suite (EMBOSS) is a
comprehensive set (about 100) of open source tools for genetic sequence
analysis.  EMBOSS is produced by the European Molecular Biology Network
(EMBnet - http://www.embnet.org/).
All EMBOSS tools are all built around the same set of core libraries - AJAX
and NUCLEUS - and therefore share a unified user interface, have similar
"look and feel", and implement a uniform sequence addressing methodology.
The various components of EMBOSS are distributed under the GPL, except the
core libraries which are under the LGPL.
EMBASSY packages are third party applications which have been integrated with
the EMBOSS suite, but which are not included in the base EMBOSS distribution
for licensing or other reasons. The EMBASSY packages live in the
biology/embassy port.
WWW: http://www.emboss.org/
Categories: biology
Maintainer: wen@FreeBSD.org
Options:
- DOCS: on
- X11: on
=============================================================================
The EMBOSS suite has been successfully installed under
/usr/local/emboss
To run EMBOSS programs make sure that /usr/local/emboss/bin is in your PATH.
In order to see graphical output from some EMBOSS programs, you will
need to set the following environment variable in your shell:
set PLPLOT_LIB to: "/usr/local/emboss/share/EMBOSS"
A sample configuration file has been installed in
/usr/local/emboss/share/EMBOSS/emboss.default.template
This must be renamed to emboss.default and edited to suit your site
and requirements.
A .embossrc file in a user's home directory overrides settings in the
system-wide emboss.default.
Additional third party applications for EMBOSS can be installed from the
biology/embassy port. Remember, though that if you installed EMBOSS in a
PREFIX other than the default, you will have to install EMBASSY into this
same PREFIX.
=============================================================================

Alternatives

Package Version Architecture Repository
emboss-6.6.0_3.txz 6.6.0 i386 FreeBSD Ports Latest
emboss-6.6.0_3.txz 6.6.0 amd64 FreeBSD Ports Quarterly
emboss-6.6.0_3.txz 6.6.0 i386 FreeBSD Ports Quarterly
emboss - - -

Requires

Name Value
libX11 = 1.6.5_1,1
libX11.so.6 -
libXpm = 3.5.12_1
libgd = 2.2.5,1
libgd.so.6 -
libpng16.so.16 -
open-motif = 2.3.8
png = 1.6.34

Provides

Name Value
libacd.so.6 -
libajax.so.6 -
libajaxdb.so.6 -
libajaxg.so.6 -
libeexpat.so.1 -
libensembl.so.6 -
libepcre.so.7 -
libeplplot.so.3 -
libezlib.so.1 -
libnucleus.so.6 -

Download

Type URL
Binary Package emboss-6.6.0_3.txz
Source Package biology/emboss

Install Howto

Install emboss txz package:

# pkg install emboss

See Also

Package Description
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emerald-themes-0.6.0.txz Themes for the Emerald Window Decorator
emesene-2.12.9_1.txz Instant messenging client written in python
emiclock-2.0.2_4.txz Hyper-animated face analog clock for X11
emil-2.1b9_1.txz Mail format/encoding converter
emma-0.6_6.txz Extendable MySQL managing assistant
emms-emacs26-5.0_1.txz Emacs Multi-Media System
emms-emacs26_canna-5.0_1.txz Emacs Multi-Media System
emms-emacs26_nox-5.0_1.txz Emacs Multi-Media System
emms-emacs27-5.0_1.txz Emacs Multi-Media System
emms-emacs27_nox-5.0_1.txz Emacs Multi-Media System
emojione-color-font-ttf-1.4_1.txz Color emoji font using EmojiOne Unicode 9.0
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